Thermofilum pendens (Thermofilum pendens Hrk 5) Genome Browser Gateway

Thermofilum pendens (Thermofilum pendens Hrk 5) Genome Browser Gateway

The UCSC Genome Browser was created by the Genome Bioinformatics Group of UC Santa Cruz.
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About the Thermofilum pendens 03/01/06 (therPend1) assembly (sequences)

Species Information

The Thermofilum pendens Hrk 5 genome is 1.81 Million bp long and contains approximately 1931 predicted genes.

Taxonomy: Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.

The most recent genome sequence draft was released 03/01/06 by the DOE Joint Genome Institute, but there is no associated genome publication to date.

Isolation: Zillig, W., A. Gierl, G. Schreiber, S. Wunderl, D. Janekovic, K. O. Stetter, and H. P. Klenk. (1983) "The archaebacterium Thermofilum pendens represents a novel genus of the thermophilic, anaerobic sulfur respiring Thermoproteales." Syst. Appl. Microbiol. 4:79-87.

Sequenced related species/strains: Caldivirga maquilingensis IC-167, Pyrobaculum aerophilum str. IM2, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum calidifontis JCM 11548, Pyrobaculum islandicum DSM 4184, Pyrobaculum oguniense, Thermoproteus neutrophilus V24Sta, Thermoproteus tenax, Vulcanisaeta distributa IC-017

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid Name Length (bp) GC Content (%) Gene Count NCBI RefSeq Accession

pTPEN01 31504 56.54 52 NC_008696

chr 1781889 57.67 1879 NC_008698

The following list shows examples of valid position queries for thisgenome:

Request: Genome Browser Response:
chr Displays the entire sequence "chr" in the browser window
chr:1-10000 Displays first ten thousand bases of the sequence "chr"
transporter Lists all genes with "transporter" in the name or description
Tpen_1849 Display genome at position of gene Tpen_1849

Phylogenetic tree of related species based on multiple-genome alignment in browser:

Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.