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  Sulfolobus acidocaldarius (Sulfolobus acidocaldarius DSM 639) Genome Browser Gateway
 
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  About the Sulfolobus acidocaldarius July 2005 (sulfAcid1) assembly (sequences)
 

Species Information

The Sulfolobus acidocaldarius DSM 639 genome is 2.23 Million bp long and contains approximately 2329 predicted genes. S. acidocaldarius is a thermophilic acidophile. It grows optimally at pH 2-3, and between 70-75C.

Taxonomy: Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.

Sequencing: The sequence was released July 2005 by the University of Copenhagen, and was described in J Bacteriol 187:4992-9 (2005) Chen L, Brugger K, Skovgaard M, Redder P, She Q, et al.."The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota."

Abstract: Sulfolobus acidocaldarius is an aerobic thermoacidophilic crenarchaeon which grows optimally at 80 degrees C and pH 2 in terrestrial solfataric springs. Here, we describe the genome sequence of strain DSM639, which has been used for many seminal studies on archaeal and crenarchaeal biology. The circular genome carries 2,225,959 bp (37% G+C) with 2,292 predicted protein-encoding genes. Many of the smaller genes were identified for the first time on the basis of comparison of three... [Click above reference link for full abstract]

Isolation: Arch Mikrobiol 84:54-68 (1972) Brock TD, Brock KM, Belly RT, Weiss RL, "Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature."

Abstract:

Sequenced related species/strains: Metallosphaera sedula DSM 5348, Sulfolobus islandicus, Sulfolobus islandicus, Sulfolobus islandicus M.16.27, Sulfolobus islandicus M.16.4, Sulfolobus islandicus Y.G.57.14, Sulfolobus islandicus Y.N.15.51, Sulfolobus solfataricus P2, Sulfolobus tokodaii str. 7

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
chr222595936.712329NC_007181

The following list shows examples of valid position queries for thisgenome: 

Request:Genome Browser Response:
chrDisplays the entire sequence "chr" in the browser window
chr:1-10000    Displays first ten thousand bases of the sequence "chr"
transporter    Lists all genes with "transporter" in the name or description
Saci_0010Display genome at position of gene Saci_0010

Phylogenetic tree of related species based on multiple-genome alignment in browser:

Phylogeny tree

Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.