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  Pyrobaculum islandicum (Pyrobaculum islandicum DSM 4184) Genome Browser Gateway
 
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  About the Pyrobaculum islandicum 12/20/06 (pyroIsla1) assembly (sequences)
 

Species Information

The Pyrobaculum islandicum DSM 4184 genome is 1.83 Million bp long and contains approximately 2062 predicted genes.

Taxonomy: Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.

The most recent genome sequence draft was released 12/20/06 by the DOE Joint Genome Institute/UCSC, but there is no associated genome publication to date.

Isolation: Non-PubMed Abstract

Sequenced related species/strains: Caldivirga maquilingensis IC-167, Pyrobaculum aerophilum str. IM2, Pyrobaculum arsenaticum DSM 13514, Pyrobaculum calidifontis JCM 11548, Pyrobaculum oguniense, Thermoproteus neutrophilus V24Sta, Thermofilum pendens Hrk 5, Thermoproteus tenax, Vulcanisaeta distributa IC-017

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
chr182640249.602062NC_008701

The following list shows examples of valid position queries for thisgenome: 

Request:Genome Browser Response:
chrDisplays the entire sequence "chr" in the browser window
chr:1-10000    Displays first ten thousand bases of the sequence "chr"
transporter    Lists all genes with "transporter" in the name or description
Pisl_0010Display genome at position of gene Pisl_0010

Phylogenetic tree of related species based on multiple-genome alignment in browser:

Phylogeny tree

Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.