Methanococcus maripaludis C6 (Methanococcus maripaludis C6) Genome Browser Gateway

Methanococcus maripaludis C6 (Methanococcus maripaludis C6) Genome Browser Gateway

The UCSC Genome Browser was created by the Genome Bioinformatics Group of UC Santa Cruz.
Software Copyright (c) The Regents of the University of California. All rights reserved.

clade	genome	assembly	position or search term	image width

Click here to reset the browser user interface settings to their defaults.

About the Methanococcus maripaludis C6 Nov 2007 (methMari_C6) assembly (sequences)

Species Information

The Methanococcus maripaludis C6 genome is 1.74 Million bp long and contains approximately 1888 predicted genes.

Taxonomy: Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.

The most recent genome sequence draft was released Nov 2007 but there is no associated genome publication to date.

Isolation: Isolation publication not available

Sequenced related species/strains: Methanococcus aeolicus Nankai-3, Methanocaldococcus fervens AG86, Methanocaldococcus infernus ME , Methanococcus jannaschii, Methanococcus maripaludis C5, Methanococcus maripaludis C7, Methanococcus maripaludis S2, Methanococcus vannielii SB, Methanocaldococcus vulcanius M7

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid Name Length (bp) GC Content (%) Gene Count NCBI RefSeq Accession

chr 1744193 33.42 1888 NC_009975

The following list shows examples of valid position queries for thisgenome:

Request: Genome Browser Response:
chr Displays the entire sequence "chr" in the browser window
chr:1-10000 Displays first ten thousand bases of the sequence "chr"
transporter Lists all genes with "transporter" in the name or description
MmarC6_0010 Display genome at position of gene MmarC6_0010

Phylogenetic tree of related species based on multiple-genome alignment in browser:

Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.