Halobacterium salinarum R1 (Halobacterium salinarum) Genome Browser Gateway

Halobacterium salinarum R1 (Halobacterium salinarum) Genome Browser Gateway

The UCSC Genome Browser was created by the Genome Bioinformatics Group of UC Santa Cruz.
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About the Halobacterium salinarum R1 Feb 2008 (haloSali1) assembly (sequences)

Species Information

The Halobacterium salinarum genome is 2.67 Million bp long and contains approximately 2934 predicted genes.

Taxonomy: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.

The most recent genome sequence draft was released Feb 2008 by the Max Planck Institute, but there is no associated genome publication to date.

Isolation: Isolation publication not available

Sequenced related species/strains: Halorubrum lacusprofundi ATCC 49239, Haloarcula marismortui ATCC 43049, Halomicrobium mukohataei, Halobacterium sp. NRC-1, Halorhabdus utahensis, Haloferax volcanii DS2, Haloferax volcanii DS2, Haloquadratum walsbyi DSM 16790, Natrialba magadii ATCC 43099, Natronomonas pharaonis DSM 2160

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid Name Length (bp) GC Content (%) Gene Count NCBI RefSeq Accession

chr 2000962 68.01 2185 NC_010364

plasmid_PHS1 147625 57.45 174 NC_010366

plasmid_PHS4 40894 57.91 40 NC_010367

plasmid_PHS3 284332 59.79 305 NC_010368

plasmid_PHS2 194963 58.59 230 NC_010369

The following list shows examples of valid position queries for thisgenome:

Request: Genome Browser Response:
chr Displays the entire sequence "chr" in the browser window
chr:1-10000 Displays first ten thousand bases of the sequence "chr"
transporter Lists all genes with "transporter" in the name or description
OE1022R Display genome at position of gene OE1022R

Phylogenetic tree of related species based on multiple-genome alignment in browser:

Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.