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  Haloarcula marismortui (Haloarcula marismortui ATCC 43049) Genome Browser Gateway
 
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  About the Haloarcula marismortui Nov. 2004 (halMar1) assembly (sequences)
 

Species Information

The Haloarcula marismortui ATCC 43049 genome is 4.27 Million bp long and contains approximately 4301 predicted genes. H. marismortui is a halophilic archaeon found in the Dead Sea, where it optimally grows at around 4.5 molar salt.

Taxonomy: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.

The most recent genome sequence draft was released Nov. 2004 by the Institute for Systems Biology, but there is no associated genome publication to date.

Isolation: Int J Syst Bacteriol 40:209-10 (1990) Oren A, Ginzburg M, Ginzburg BZ, Hochstein LI, Volcani BE, "Haloarcula marismortui (Volcani) sp. nov., nom. rev., an extremely halophilic bacterium from the Dead Sea."

Abstract: An extremely halophilic red archaebacterium isolated from the Dead Sea (Ginzburg et al., J. Gen. Physiol. 55: 187-207, 1970) belongs to the genus Haloarcula and differs sufficiently from the previously described species of the genus to be designated a new species; we propose the name Haloarcula marismortui (Volcani) sp. nov., nom. rev. because of the close resemblance of this organism to "Halobacterium marismortui," which was first described by Volcani in 1940. The type strain is... [Click above reference link for full abstract]

Sequenced related species/strains: Halorubrum lacusprofundi ATCC 49239, Halomicrobium mukohataei, Halobacterium salinarum, Halobacterium sp. NRC-1, Halorhabdus utahensis, Haloferax volcanii DS2, Haloferax volcanii DS2, Haloquadratum walsbyi DSM 16790, Natrialba magadii ATCC 43099, Natronomonas pharaonis DSM 2160

Browse Specific Gene/Feature Sets

Sample position queries

A genome position can be specified by chromosomal coordinate range, COGID, or keywords from the GenBank or TIGR description of a gene. The available chromosome/plasmid names are:

Browser Chrom/Plasmid NameLength (bp)GC Content (%)Gene CountNCBI RefSeq Accession
plasmid_pNG1003330354.2536NC_006389
plasmid_pNG2003345255.6342NC_006390
plasmid_pNG3003952160.0240NC_006391
plasmid_pNG4005006057.3551NC_006392
plasmid_pNG50013267854.48131NC_006393
plasmid_pNG60015530058.33167NC_006394
plasmid_pNG70041055459.12363NC_006395
chrI313172462.363186NC_006396
chrII28805057.23285NC_006397

The following list shows examples of valid position queries for thisgenome: 

Request:Genome Browser Response:
chrIDisplays the entire sequence "chrI" in the browser window
chrI:1-10000    Displays first ten thousand bases of the sequence "chrI"
transporter    Lists all genes with "transporter" in the name or description
pNG1011Display genome at position of gene pNG1011

Phylogenetic tree of related species based on multiple-genome alignment in browser:

Phylogeny tree

Credits

The Archaeal Genome Browsers at UCSC were developed by members of theLowe Lab (Kevin Schneider,Katherine Pollard, Andy Pohl, Todd Lowe) and Robert Baertsch, with significant support fromthe UCSC Human GenomeBrowser group.The Archaeal Browsers are run by a slightly modifiedversion of the UCSC Human GenomeBrowser system. All queries, bug reports, content corrections, suggested improvements,and new track data submissions should be sent to Todd Lowe (lowe@soe.ucsc.edu).

If you use the browser in your published research, please cite ourpublication in the Nucleic Acids Research DatabaseIssue. Citations and positive feedback will help us obtain fundingto continue development of this community resource.